Publications



Dans les revues à comité de lecture



2024

105- Bhunjun CS, Chen YJ, Phukhamsakda C, Boekhout T, Groenewald JZ, McKenzie EHC, Francisco EC, Frisvad JC, Groenewald M, Hurdeal VG, Luangsa-ard J, Perrone G, Visagie CM, Bai FY, Błaszkowski J, Braun U, de Souza FA, de Queiroz MB, Dutta AK, Gonkhom D, Goto BT, Guarnaccia V, Hagen F, Houbraken J, Lachance MA, Li JJ, Luo KY, Magurno F, Mongkolsamrit S, Robert V, Roy N, Tibpromma S, Wanasinghe DN, Wang DQ, Wei DP, Zhao CL, Aiphuk W, Ajayi-Oyetunde O, Arantes TD, Araujo JC, Begerow D, Bakhshi M, Barbosa RN, Behrens FH, Bensch K, Bezerra JDP, Bilański P, Bradley CA, Bubner B, Burgess TI, Buyck B, Čadež N, Cai L, Calaça FJS, Campbell LJ, Chaverri P, Chen YY, Chethana KWT, Coetzee B, Costa MM, Chen Q, Custódio FA, Dai YC, Damm U, de Azevedo Santiago ALCM, De Miccolis Angelini RM, Dijksterhuis J, Dissanayake AJ, Doilom M, Dong W, Alvarez-Duarte E, Fischer M, Gajanayake AJ, Gené J, Gomdola D, Gomes AAM, Hausner G, He MQ, Hou L, Iturrieta-González I, Jami F, Jankowiak R, Jayawardena RS, Kandemir H, Kiss L, Kobmoo N, Kowalski T, Landi L, Lin CG, Liu JK, Liu XB, Loizides M, Luangharn T, Maharachchikumbura SSN, Makhathini Mkhwanazi GJ, Manawasinghe IS, Marin-Felix Y, McTaggart AR, Moreau PA, Morozova OV, Mostert L, Osiewacz HD, Pem D, Phookamsak R, Pollastro S, Pordel A, Poyntner C, Phillips AJL, Phonemany M, Promputtha I, Rathnayaka AR, Rodrigues AM, Romanazzi G, Rothmann L, Salgado-Salazar C, Sandoval-Denis M, Saupe SJ, Scholler M, Scott P, Shivas RG, Silar P, Souza-Motta CM, Silva-Filho AGS, Spies CFJ, Stchigel AM, Sterflinger K, Summerbell RC, Svetasheva TY, Takamatsu S, Theelen B, Theodoro RC, Thines M, Thongklang N, Torres R, Turchetti B, van den Brule T, Wang XW, Wartchow F, Welti S, Wijesinghe SN, Wu F, Xu R, Yang ZL, Yilmaz N, Yurkov A, Zhao L, Zhao RL, Zhou N, Hyde KD, Crous PW (2024). What are the 100 most cited fungal genera? Studies in Mycology 108: 1-411. doi: 10.3114/sim.2024.108.01

104- Ament-Velásquez S.L., Vogan A.A., Wallerman O., Hartmann F., Gautier V., Silar P., Giraud T. & Johannesson H. (2024) High-quality genome assemblies of four members of the Podospora anserina species complex. GBE 16(3) evae034. doi.org/10.1093/gbe/evae034

103- Essadik I., Boucher C., Bobée C., Cabet E., Gautier V., Lalucque H., Silar P., Chapeland-Leclerc F. & Ruprich-Robert G. (2024) Mutations in Podospora anserina MCM1 and VelC trigger spontaneous development of barren fruiting bodies. JoF 10: 79. doi:10.3390/jof10010079

102- Gautier V., Nguyen T.S. & Silar P. (2024) Fungal/bacterial syntrophy of glycerol utilization Cryptogamie Mycologie 45(6): 53-66. doi.org/10.5252/cryptogamie-mycologie2024v45a6

101- Ferrari R., Gautier V., Tangthirasunun N., Chan Ho Tong L. & Silar P. (2024) Characterization of the Podospora anserina peroxidase gene family. Cryptogamie Mycologie 45(2): 11-28. doi.org/10.5252/cryptogamiemycologie2024v45a2

2023

100- Luong T.T.H., Silar P., Poeaim S. & Tangthirasunun N, (2023) Isolation, screening wood rot fungi from the tropical forest of Thailand and their lignocellulolytic enzyme production under solid-state fermentation using agricultural waste as substrate. Biomass Conv. Bioref. doi.org/10.1007/s13399-023-05129-1

99- Hensen N., Bonometti L., Westerberg I., Brännströmc I.O., Guillou S., Cros-Aarteil S., Calhoun S., Haridas S., Kuo A., Mondo S., Pangilinan J., Riley R., LaButti K., Andreopoulos B., Lipzen A., Chen C., Yan M., Daum C., Ng V., Clum A., Steindorff A., Ohm R., Martin F., Silar P., Natvig D., Lalanne C., Gautier V., Ament-Velásquez S.L., Kruys A., Hutchinson M.I., Powell A.J., Barry K., Miller A.N., Grigoriev I.V., Debuchy R., Gladieux P., Hiltunen Thorén M. & Johannesson H. (2023) Genome-scale phylogeny and comparative genomics of the fungal order Sordariales. Mol. Phylogenet. Evol. 189: 107938. doi.org/10.1016/j.ympev.2023.107938

98- Vittorelli N., Rodríguez de la Vega R.C., Snirc A., Levert E., Gautier V., Lalanne C., De Filippo E., Gladieux P., Guillou S., Zhang Y., Tejomurthula S., Grigoriev I.V., Debuchy R., Silar P., Giraud T. & Hartmann F.E. (2023) Stepwise recombination suppression around the mating-type locus in an ascomycete fungus with self-fertile spores. PLOS Genet. 19(2):e1010347. doi.org/10.1371/journal.pgen.1010347

97- Demoor A., Lacaze I., Ferrari R., Lalanne C., Silar P. & Brun S. (2023) The GUN mutants: new weapons to unravel ascospore germination regulation in the model fungus Podospora anserina. Microb. Spectr. 11(2):e0146122. doi.org/10.1128/spectrum.01461-22

2022

96- Nguyen T.S., Gautier V., Chan Ho Tong L. & Silar P. (2022) A gene cluster with positive and negative elements controls bistability and hysteresis of the Crippled versus Normal growth in the fungus Podospora anserina. Fung. Fenet. Biol. 161: 103711. doi:10.1093/g3journal/jkab159

2021

95- Gautier V., Levert E., Giraud T. & Silar P. (2021) Important role of melanin for fertility in the fungus Podospora anserina. G3 11(8), jkab159. doi:10.1093/g3journal/jkab159

94- Vogan A., Miller A.N. & Silar P. (2021) Proposal to change the conserved type of Podospora, nom. cons. (Ascomycota). Taxon 70(2): 429-430. doi.org/10.1002/tax.12478

93- Hartmann F.E., Ament-Velásquez S.L., Vogan A.A., Gautier V., Le Prieur S., Berramdane M., Snirc A., Johannesson H., Grognet P, Malagnac F., Silar P. & Giraud T. (2021) Size variation of the non-recombining region on the mating-type chromosomes in the fungal Podospora anserina species complex. Mol. Biol. Evol. 38(6):2475-2492. doi.org/10.1093/molbev/msab040

92- Valette N., Renou J., Boutilliat A., Fernández‐González A.J., Gautier V., Silar P., Guyeux C., Charr J.-C., Cuenot S., Rose C., Gelhaye E. & Morel‐Rouhier M. (2021) OSIP1 is a self‐assembling DUF3129 protein required to protect fungal cells from toxins and stressors. Env. Microbiol. 23(3):1594-1607. doi:10.1111/1462-2920.15381

91- Hartmann F.E., Duhamel M., Carpentier F, Hood M.E., Foulongne-Oriol M., Silar P., Malagnac F., Grognet P. & Giraud T (2021) Pervasive recombination suppression around mating-type loci in fungi: documenting patterns and understanding evolutionary and proximal causes. New Phytologist 229 (5): 2470-2491. doi:10.1111/nph.17039

2020

90- Dicko M., Ferrari R., Tangthirasunun N., Gautier V., Lalanne C., Lamari F. & Silar P. (2020) Lignin degradation and its use in signaling development by the coprophilous ascomycete Podospora anserina. Journal of Fungi 6:278. doi:10.3390/jof6040278

89- Lorena Ament-Velásquez S., Johannesson H, Giraud T., Debuchy R., Saupe S.J., Debets A.J.M., Bastiaans E., Malagnac F., Grognet P., Peraza-Reyes L., Gladieux P., Kruys Å., Silar P, Huhndorf S.M., Miller A. & Vogan A. (2020) The taxonomy of the model filamentous fungus Podospora anserina. MycoKeys 75:51-69. doi:10.3897/mycokeys.75.55968

2019

88- Mercier A, Clairet C., Debuchy R, Morais D. Silar P & Brun S (2019) The mitochondrial translocase of the inner membrane PaTim54 is involved in defense response and longevity in Podospora anserina. Fung. Genet. Biol. 132: 1032572. doi:10.1016/j.fgb.2019.103257

87- Demoor A, Silar P & Brun S (2019) Appressorium: The Breakthrough in Dikarya. J. Fungi 5(3): 72. doi:10.3390/jof5030072

86- Silar P, Dauget JM, Gautier V, Grognet P, Chablat M, Hermann Le Denmat S, Couloux A, Wincker P & Debuchy R (2019) A gene graveyard in the genome of the fungus Podospora comata. Mol. Gen. Genom. 294: 177-190. doi:10.1007/s00438-018-1497-3

2018

85- Nguyen TS, Lalucque H & Silar P (2018) Identification and characterization of PDC1, a novel protein involved in the epigenetic cell degeneration Crippled Growth in Podospora anserina. Mol. Microbiol. 110(4): 499-512. doi:10.1111/mmi.14096

84- Ferrari R, Lacaze I, Le Faouder P, Bertrand-Michel J, Oger C, Galano JM, Durand T, Moularat S, Chan Ho Tong L, Boucher C, Kilani J, Petit Y, Vanparis O, Trannoy C, Brun S, Lalucque H, Malagnac F & Silar (2018) Cyclooxygenases and lipoxygenases are used by the fungus Podospora anserina to repel nematodes. Biochimica & Biophysica Acta (BBA) - General Subjects 1862(10): 2174-2182. doi:10.1016/j.bbagen.2018.07.012

83- Gautier V, Chan Ho Tong L, Nguyen TS, Debuchy R & Silar P (2018) PaPro1 and IDC4, two genes controlling stationary phase, sexual development and cell degeneration in Podospora anserina. J. Fungi. 4(3): 85. doi.org/10.1016/j.ydbio.2016.12.016

82- Xie N, Ruprich-Robert G, Silar P, Herbert E, Ferrari R & Chapeland-Leclerc F (2018) Characterization of three multicopper oxidases in the filamentous fungus Podospora anserina: A new role of ABR1-like in fungal development. Fung. Genet. Biol. 116: 1-13. doi.org/10.1016/j.fgb.2018.04.007

81- Silar P (2018) Epitypification of Malinvernia anserina revisited. Schlechtendalia 34: 1-2. doi.org/10.25673/90162

80- Cohen M, Lepesant G, Lamari F, Bilodeau C, Benyei P, Angles S, Bouillon J, Bourrand K, Landoulsi R, Jaboeuf D, Alonso-Roldan M, Espadas I, Belandria V, Silar P & Dicko M (2018) Biomolecules from olive pruning waste in Sierra Mágina - Engaging the energy transition by multi-actor and multidisciplinary analyses. J. Env. Manag. 216: 204-213. doi.org/10.1016/j.jenvman.2017.03.067

2017

79- Boucher C., Nguyen TS & Silar P (2017) Species delimitation in the Podospora anserina/P. pauciseta/P. comata species complex (Sordariales). Cryptogamie Mycologie 38(4): 485-506. doi.org/10.7872/crym/v38.iss4.2017.485

78- Xie N, Ruprich-Robert G, Chapeland-Leclerc F, Coppin E, Lalucque H, Brun S, Debuchy R & Silar P (2017) Inositol-phosphate signaling as mediator for growth and sexual reproduction in Podospora anserina. Dev. Biol. 429: 285-305. doi:10.1016/j.ydbio.2017.06.017

77- Lalucque H, Malagnac F, Green K, Gautier V, Grognet P, Chan Ho Tong L, Scott B & Silar P (2017) IDC2 and IDC3, two genes involved in cell non-autonomous signaling of fruiting body development in the model fungus Podospora anserina. Dev. Biol. 421: 126-138. doi:10.1016/j.ydbio.2016.12.016

76- Green KA2, Becker Y, Tanaka A, Takemoto D, Fitzsimons HL, Seiler S, Lalucque H, Silar P & Scott B (2017) SymB and SymC, two membrane associated proteins, are required for Epichloë festucae hyphal cell-cell fusion and maintenance of a mutualistic interaction with Lolium perenne. Mol. Microbiol. 103: 657-677. doi:10.1111/mmi.13580

75- Tangthirasunun N, Navarro D, Garajova S, Chevret D, Chan Ho Tong L, Gautier V, Hyde KD, Silar P & Berrin JG (2017) Inactivation of Cellobiose Dehydrogenases Modifies the Cellulose Degradation Mechanism of Podospora anserina. Appl. Env. Microbiol. 83: e02716-16. doi:10.1128/AEM.02716-16

2016

74- Lacaze I, Moularat S, Bousta F, Draghi M, Silar P & Robine E (2016) Etude de la dynamique de colonisation microbienne de produits de construction. Matériaux et techniques 104: 507 1-13. doi.org/10.1051/mattech/2016035

73- Jaber S, Mercier A, Knio K, Brun S & Kambris Z (2016) Isolation of fungi from dead arthropods and identification of a new mosquito natural pathogen. Parasites & Vectors 9(1): 491. doi.org/10.1186/s13071-016-1763-3

72- Timpano H, Chan Ho Tong L, Gautier V, Lalucque H & Silar P (2016) The PaPsr1 and PaWhi2 genes are members of the regulatory network that connect stationary phase to mycelium differentiation and reproduction in Podospora anserina. Fung. Genet. Biol. 94: 1-10. doi:10.1016/j.fgb.2016.06.006

71- Couturier M, Tangthirasunun N, Xie N, Brun S, Gautier V, Bennati-Granier C, Silar P, Berrin JG (2016) Plant biomass degrading ability of the coprophilic ascomycete fungus Podospora anserina. Biotechnology Advances 34: 976-983. doi.org/10.1016/j.biotechadv.2016.05.010

70- Wijayawardene NN, Hyde KD, Wanasinghe DN, Papizadeh M, Goonasekara ID, Camporesi E, Bhat DJ, McKenzie EHC, Phillips AJL, Diederich P, Tanaka K, Li WJ, Tangthirasunun N, Phookamsak R, Dai D-Q, Dissanayake AJ, Weerakoon G, Maharachchikumbura SSN, Hashimoto A, Matsumura M, Bahkali AH & Wang Y (2016) Taxonomy and phylogeny of dematiaceous coelomycetes. Fungal Diversity 77: 1-316. doi:10.1007/s13225-016-0360-2

2015

69- Tangthirasunun N, Silar P, Bhat DJ, Maharachchikumbura SSN, Wijayawardene NN, Bahkali AH & Hyde KD (2015) Morphology and phylogeny of two appendaged genera of coelomycetes: Ciliochorella and Discosia. Sydowia 66: 217-226. doi:10.12905/0380.sydowia67-2015-0217

68- Chapeland-Leclerc F, Dilmaghani A, Ez-Zaki L, Boisnard S, Da Silva B, Gaslonde T, Porée FH & Ruprich-Robert G (2015) Systematic gene deletion and functional characterization of histidine kinase phosphorelay receptors (HKRs) in the human pathogenic fungus Aspergillus fumigatus. Fung. Genet. Biol. 84: 1-11. doi:10.1016/j.fgb.2015.09.005

67- Chan Ho Tong L, Dairou J, Bui LC, Bouillon J, Rodrigues-Lima F, Dupret JM & Silar P (2015) Screen for soil fungi highly resistant to dichloroaniline uncovers mostly Fusarium species. Fung. Genet. Biol. 81: 82-87. doi:10.1016/j.fgb.2015.05.011

66- Grognet P & Silar P (2015) Maintaining heterokaryosis in pseudo-homothallic fungi. Comm. Int. Biol. 8(4): e994382. doi:10.4161/19420889.2014.994382

65- Lacaze I, Lalucque H, Siegmund U, Silar P & Brun S (2015) Identification of NoxD/Pro41 as the homologue of the p22phox NADPH oxidase subunit in fungi. Mol. Microbiol. 95: 1006-1024. doi:10.1111/mmi.12876

64- Goarin A, Silar P & Malagnac F (2015) Gene replacement in Penicillium roqueforti. Curr. Genet. 61: 203-210. doi:10.1007/s00294-014-0456-8

63- Xie N, Ruprich-Robert G, Silar P & Chapeland-Leclerc F (2015) Bilirubin oxidase-like proteins from Podospora anserina: promising thermostable enzymes for application in transformation of plant biomass. Env. Microbiol. 17: 866-875. doi:10.1111/1462-2920.12549

2014

62- Tangthirasunun N, Silar P, Bhat DJ, Maharachchikumbura SSN & Hyde KD (2014) Greeneria saprophytica sp. nov. on dead leaves of Syzygium cumini from Chiang Rai, Thailand. Phytotaxa 184: 275-282. doi.org/10.11646/phytotaxa.184.5.3

61- Chan Ho Tong L, Silar P & Lalucque H (2014) Genetic control of anastomosis in Podospora anserina. Fung. Genet. Biol. 70: 94-103. doi:10.1016/j.fgb.2014.07.006

60- Tangthirasunun N, Silar P, Bhat DJ, Chukeatirote E, Wikee S, Maharachchikumbura SNM, Hyde KD & Wang Y (2014) Morphology and phylogeny of Chaetospermum (asexual coelomycetous Basidiomycota). Phytotaxa 175: 061-072. doi.org/10.11646/phytotaxa.175.2.1

59- Silar P (2014) Simple genetic tools to study fruiting body development in fungi. Open Mycol. 8: 148-155. doi:10.2174/1874437001408010148

58- Tangthirasunun N, Silar P, Bhat DJ, Chukeatirote E, Wijayawardene DNN, Maharachchikumbura SSN & Hyde KD (2014) Morphology and phylogeny of Pseudorobillarda eucalypti sp. nov., from Thailand. Phytotaxa 176: 251-259. doi.org/10.11646/phytotaxa.176.1.24

57- Grognet P, Lalucque H, Malagnac F & Silar P (2014) Genes That Bias Mendelian Segregation. PLoS Genetics 10: e1004387. doi.org/10.1371/journal.pgen.1004387

56- Grognet P, Bidard F, Kuchly C, Chan Ho Tong L, Coppin E, Ait Benkhali J, Couloux A, Wincker P, Debuchy R & Silar P (2014) Maintaining two mating types: Structure of the mating type locus and its role in heterokaryosis in Podospora anserina. Genetics 197: 421-432. doi:10.1534/genetics.113.159988

55- Cheeseman K, Ropars J, Renault P, Dupont J, Gouzy J, Branca A, Abraham AL, Ceppi M, Conseiller E, Debuchy R, Malagnac F, Goarin A, Silar P, Lacoste S, Sallet A, Bensimon A, Giraud T & Brygoo Y (2014) Multiple recent horizontal transfers of a large genomic region in cheesemaking fungi. Nat. Comm. 5: 2876. doi:10.1038/ncomms3876

54- Xie N, Chapeland-Leclerc F, Silar P & Ruprich-Robert G (2014) Systematic gene deletions evidences that laccases are involved in several stages of wood degradation in the filamentous fungus Podospora anserina. Env. Microbiol. 16: 141-161. doi:10.1111/1462-2920.12253

2013

53- Malagnac F, Fabret C, Prigent M, Rousset JP, Namy O & Silar P (2013) A Rab-GDI complex dissociation factor expressed through translational frameshifting in filamentous ascomycetes. PLoS ONE 8(9): e73772. doi.org/10.1371/journal.pone.0073772

52- Ait Benkhali J, Coppin E, Brun S, Peraza-Reyes L, Martin T, Dixelius D, Lazar N, van Tilbeurgh H & Debuchy R (2013) A Network of HMG-Box Transcription Factors Regulates Sexual Cycle in the Fungus Podospora anserina. PLoS Genetics 7: e1003642. doi:10.1371/journal.pgen.1003642

51- Cocaign A, Bui L-H, Silar P, Chan Ho Tong L, Busi F, Lamouri A, Mougin C, Rodrigues-Lima F, Dupret JM & Dairou J (2013) Biotransformation and tolerance of Trichoderma spp. to aromatic amines, a major class of pollutants. Appl. Env. Microb. 79: 4719-4726. doi:10.1128/AEM.00989-13

2012

50- Morcx S, Kunz C, Choquer M, Assié S, Blondet, Simond-côte E, Gajek K, Chapeland-Leclerc F, Expert D & Soulié M-C. (2012) Disruption of Bcchs4, Bcchs6 or Bcchs7 chitin synthase genes in Botrytis cinerea and the essential role of classVI chitin synthase (Bcchs6). Fung. Genet. Biol. 52: 1-8. doi:10.1016/j.fgb.2012.11.011

49- Déquard-Chablat M, Nguyen T-T, Contamine V, Hermann-Le Denmat S & Malagnac F (2012) Efficient tools to target DNA to Podospora anserina. Fung Gen. Rep. 59: 21-25. doi.org/10.4148/1941-4765.1011

48- Ropars J, Dupont J, Fontanillas E, Rodríguez de la Vega R, Malagnac F, Coton M, Giraud T & López-Villavicencio M (2012) Sex in cheese: evidence for sexuality in the fungus Penicillium roqueforti. PLOS One 7(11): e49665. doi:10.1371/journal.pone.0049665

47- Grognet P, Lalucque H & Silar P (2012) The PaAlr1 magnesium transporter is required for ascospore development in Podospora anserina. Fung. Biol. 116: 1111-1118. doi:10.1016/j.funbio.2012.08.004

46- Bidard F, Coppin E & Silar P (2012) The transcriptional response to the inactivation of the PaMpk1 and PaMpk2 MAP kinase pathways in Podospora anserina. Fung. Genet. Biol. 49: 643–652. doi:10.1016/j.fgb.2012.06.002

45- Coppin E, Berteaux-Lecellier V, Bidard F, Brun S, Ruprich-Robert G, Espagne E, Aït-Benkhali J, Goarin A, Nesseir A, Planamente S, Debuchy R & Silar P (2012) Systematic deletion of homeobox genes in Podospora anserina uncovers their roles in shaping the fruiting body. PLoS ONE 7(5): e37488. doi.org/10.1371/journal.pone.0037488

44- Lalucque H, Malagnac F, Brun S, Kicka S & Silar P (2012) A non-mendelian MAPK-generated hereditary unit controlled by a second MAPK pathway in Podospora anserina. Genetics 191: 419–433. doi:10.1534/genetics.112.139469

43- Lasrama S, Oueslati S, Mliki A, Ghorbel A, Silar P & Chebil S (2012) Ochratoxin A and ochratoxigenic black Aspergillus species in Tunisian grapes cultivated in different geographic areas. Food Control 25: 75-80. doi.org/10.1016/j.foodcont.2011.10.006

42- Bourdais A, Bidard F, Zickler D, Berteaux-Lecellier V, Silar P & Espagne E (2012) Wood utilization is dependent on catalase activities in the filamentous fungus Podospora anserina. PLoS One 7(4): e29820. doi.org/10.1371/journal.pone.0029820

2011

41- Bidard F, Aït Benkhali J, Coppin E, Imbeaud S, Grognet P, Delacroix H & Debuchy R (2011) Genome-wide gene expression profiling of fertilization competent mycelium in opposite mating types in the heterothallic fungus Podospora anserina. PLoS One 6(6): e21476. doi.org/10.1371/journal.pone.0021476

40- Silar P (2011) Grafting as a mean to study development in the filamentous fungus Podospora anserina. Fungal Biol. 115: 793-802. doi.org/10.1016/j.funbio.2011.06.005

39- Espagne E, Vasnier C, Storlazzi A, Kleckner N, Silar P, Zickler D & Malagnac F (2011) Sme4 coiled-coil protein mediates synaptonemal complex assembly, recombinosome relocalization and spindle pole body morphogenesis. Proc. Natl. Acad. Sci. U.S.A. 26: 10614-10619. doi.org/10.1073/pnas.1107272108

2010

38- Martins M, Dairou J, Rodrigues-Lima F, Dupret JM & Silar P (2010) Insights into the phylogeny or arylamine N-acetyltransferases in fungi. J. Mol. Evol. 71: 141–152. doi:10.1007/s00239-010-9371

37- Grissa I, Bidard F, Grognet P, Grossetete S & Silar P (2010) The Nox/Ferric reductase/Ferric reductase-like families of Eumycetes. Fungal Biol. 114: 766-777. doi:10.1016/j.funbio.2010.07.002

36- Bidard F, Imbeaud S, Reymond N, Lespinet O, Silar P, Clave C, Delacroix H, Berteaux-Lecellier V & Debuchy R (2010) A general framework for optimization of probes for gene expression microarray and its application to the fungus Podospora anserina. BMC Res Notes 3: 171. doi:10.1186/1756-0500-3-171

2009

35- Brun S, Malagnac F, Bidard F, Lalucque H & Silar P (2009) Functions and regulation of the Nox family in the filamentous fungus Podospora anserina: a new role in cellulose degradation. Mol. Microbiol. 74: 480-496. doi:10.1111/j.1365-2958.2009.06878

34- Martins M, Rodrigues-Lima F, Dairou J, Lamouri A, Malagnac F, Silar P & Dupret JM (2009) An acetyltransferase conferring tolerance to toxic aromatic amine chemicals: molecular and functional studies. J. Biol. Chem. 284: 18726-18733. doi:10.1074/jbc.M109.015230

2008

33- Malagnac F, Bidard F, Lalucque H, Brun S, Lambou K, Lebrun MH & Silar P (2008) Convergent evolution of morphogenetic processes in fungi: Role of tetraspanins and NADPH oxidases 2 in plant pathogens and saprobes. Communicative & Integrative Biology 1:180-181. doi:10.4161/cib.1.2.7198

32- Lambou K, Malagnac F, Barbisan C, Tharreau D, Lebrun MH & Silar P (2008) The crucial role during ascospore germination of the Pls1 tetraspanin in Podospora anserina provides an example of the convergent evolution of morphogenetic processes in fungal plant pathogens and saprobes. Euk. Cell 7: 1809-1818. doi.org/10.1128/ec.00149-08

31- Espagne E$, Lespinet O$, Malagnac F$, Da Silva C, Jaillon O, Porcel BM, Couloux A, Aury J.M, Ségurens B, Poulain J, Anthouard V, Grossetete S, Khalili H, Coppin E, Déquard-Chablat M, Picard M, Contamine V, Arnaise S, Bourdais A, Berteaux-Lecellier V, Gautheret D, de Vries RP, Battaglia E, Coutinho PM, Danchin EGJ, Henrissat B, El Khoury R, Sainsard-Chanet A, Boivin A, Pinan-Lucarré B, Sellem C.H, Debuchy R, Wincker P, Weissenbach J & Silar P (2008) The Genome Sequence of the Model Ascomycete Fungus Podospora anserina. Genome Biology 9: R77. $ These authors contributed equally to the work. doi.org/10.1186/gb-2008-9-5-r77

2007

30- Malagnac M, Klapholz B & Silar P (2007) PaTrx1 and PaTrx3, two cytosolic thioredoxins of the filamentous ascomycete Podospora anserina involved in sexual development and cell degeneration. Euk. Cell 6: 2323-2331. doi:10.1128/EC.00083-07

29- Jamet-Vierny C, Debuchy R, Prigent M & Silar P (2007) IDC1, a Pezizomycotina-specific gene that belongs to the PaMpk1 MAP kinase transduction cascade of the filamentous fungus Podospora anserina. Fung. Genet. Biol. 44: 1219-1230. doi:10.1016/j.fgb.2007.04.005

28- Coppin E & Silar P (2007) Identification of PaPKS1, a polyketide synthase involved in melanin formation and its utilization as a genetic tool in Podospora anserina. Mycol. Res. 111: 901-908. doi:10.1016/j.mycres.2007.05.011

2006

27- Dequard-Chablat M & Silar P (2006) Podospora anserina AS6 gene encodes the cytosolic ribosomal protein of the E. coli S12 family. Fung. Genet. Newslett. 53: 26-29. doi.org/10.4148/1941-4765.1111

26- Malagnac F & Silar P (2006) Regulation, cell differentiation and protein-based inheritance. Cell Cycle 5: 2584 - 2587. doi:10.4161/cc.5.22.3465

25- Kicka S, Bonnet C, Sobering AK, Ganesan LP & Silar P (2006) A mitotically inheritable unit containing a MAP kinase module. Proc. Natl. Acad. Sci. U.S.A. 36: 13445-13450. doi:10.1073/pnas.0603693103

2005

24- Haedens V, Malagnac F & Silar P (2005) Genetic control of an epigenetic cell degeneration syndrome in Podospora anserina. Fung. Genet. Biol. 42: 564-577. doi:10.1016/j.fgb.2005.03.011

23- Silar P (2005) Peroxide accumulation and cell death in filamentous fungi induced by contact with a contestant. Mycol. Res. 109: 137-149. doi.org/10.1017/S0953756204002230

2004

22- Malagnac F, Lalucque H, Lepère G & Silar P (2004) Two NADPH oxidase isoforms are required for sexual reproduction and ascospore germination in the filamentous fungus Podospora anserina. Fung. Genet. Biol. 41: 982-997. doi:10.1016/j.fgb.2004.07.008

21- Graziani S, Silar P & Daboussi MJ (2004) Bistability and hysteresis of the “Secteur” differentiation is controlled by a two-gene locus in Nectria haematococca. BMC Biology 2:18. doi:10.1186/1741-7007-2-18

20- Kicka S & Silar P (2004) PaASK1, a MAPKKK that controls cell degeneration and cell differentiation in Podospora anserina. Genetics 166: 1241-1252. doi:10.1534/genetics.166.3.1241

19- Lalucque H & Silar P (2004) Incomplete penetrance and variable expressivity of a growth defect as a consequence of knocking out two K+ transporters in the euascomycete fungus Podospora anserina. Genetics 166: 125-134. doi:10.1534/genetics.166.1.125

2003

18- Malagnac F & Silar P (2003) Non-Mendelian determinants of morphology in fungi. Curr. Op. Microbiol. 6: 641-645. doi:10.1016/j.mib.2003.10.003

17- Silar P, Barreau C, Debuchy R, Kicka S, Turcq B, Sainsard-Chanet A, Sellem CH, Billault A, Cattolico L, Duprat S & Weissenbach J (2003) Characterization of the genomic organization of the region bordering the centromere of chromosome V of Podospora anserina by direct sequencing. Fung. Genet. Biol. 39: 250-263. doi:10.1016/s1087-1845(03)00025-2.

16- Lalucque H & Silar P (2003) NADPH oxidases : an enzyme for multicellularity? Trends Microbiol. 11: 9-12. doi:10.1016/s0966-842x(02)00007-0

2002

15- Barreau C, Sellem C, Silar P, Sainsard-Chanet A & Turcq B (2002) A rapid and efficient method using chromoslots to assign any newly cloned DNA sequence to its cognate chromosome in the filamentous fungus Podospora anserina. FEMS Microbiol. Lett. 216: 55-60. doi:10.1111/j.1574-6968.2002.tb11414.x

2001

14- Silar P, Lalucque H, Haedens V, Zickler D & Picard M (2001) eEF1A controls ascospore differentiation through elevated accuracy, but controls longevity and fruiting body formation through another mechanism in Podospora anserina. Genetics 158: 1477–1489. doi:10.1093/genetics/158.4.1477

13- Silar P, Lalucque H & Vierny C (2001) Cell degeneration in the model system Podospora anserina. Biogerontology 2: 1-17. doi:10.1023/a:1010000816277

2000

12- Lalucque H & Silar P (2000) In vivo labelling of functional ribosomes reveals spatial regulation during starvation in Podospora anserina. BMC Genetics 1: 3.
doi:10.1186/1471-2156-1-3

11- Silar P, Rossignol M, Tahar R, Derhy Z & Mazabraud M (2000) Informational suppressor alleles of eEF1A gene, fertility & cell degeneration in Podospora anserina. Mol. Gen. Genet. 264: 354-362. doi:10.1007/s004380000337

10- Silar P, Rossignol M, Haedens V, Derhy Z & Mazabraud A (2000) Deletion & dosage modulation of the eEF1A gene in Podospora anserina: effect on the life cycle. Biogerontology 1: 47-54. doi:10.1023/a:1010029723081

1999

9- Jamet-Vierny C, Rossignol M, Haedens V & Silar P (1999) What triggers Senescence in Podospora anserina? Fung. Genet. Biol. 27: 26-35. doi.org/10.1006/fgbi.1999.1127

8- Silar P & Daboussi MJ (1999) Non-conventional infectious elements in filamentous fungi. Trends Genet. 15: 141-145. doi:10.1016/s0168-9525(99)01698-4

7- Silar P, Haedens V, Rossignol M & Lalucque H (1999) Propagation of a novel cytoplasmic, infectious and deleterious determinant is controlled by translational accuracy in Podospora anserina. Genetics 151: 87-95. doi:10.1093/genetics/151.1.87

1998

6- Gagny B & Silar P (1998) Identification of the genes encoding the cytosolic translation release factors from Podospora anserina and analysis of their role during the life cycle. Genetics 149: 1763-1765. doi:10.1093/genetics/149.4.1763

1997

5- Jamet-Vierny C, Contamine V, Boulay J, Zickler D & Picard M (1997) Mutations in genes encoding the mitochondrial outer membrane proteins Tom70 and Mdm10 of Podospora anserina modify the spectrum of mitochondrial DNA rearrangements associated with cellular death. Mol. Cell. Biol. 17: 6359-6366. doi:10.1128/MCB.17.11.6359

4- Gagny B, Rossignol M & Silar P (1997) Cloning, sequencing and transgenic expression of Podospora curvicolla and Sordaria macrospora eEF1A genes: relationship between cytosolic translation and longevity in filamentous fungi. Fung. Genet. Biol. 22: 191-198. doi:10.1006/fgbi.1997.1012

3- Silar P, Koll F & Rossignol M (1997) Cytosolic ribosomal mutations that abolish amplification of circular intron without preventing senescence in Podospora anserina. Genetics 145: 697:705. doi:10.1093/genetics/145.3.697

2- Jamet-Vierny C, Boulay J, Begel O & Silar P (1997) Contribution of various classes of defective mitochondrial DNA molecules to senescence in Podospora anserina. Curr. Genet. 31: 171-178. doi:10.1007/s002940050192

1- Jamet-Vierny C, Boulay J & Briand JF (1997) Intramolecular cross-overs generate deleted mitochondrial DNA molecules in Podospora anserina. Curr. Genet. 31: 162-170. doi:10.1007/s002940050191

Livres

2020

5- Philippe Silar (2020) Génétique : Concepts de Base et Notions Approfondies. En accès libre (https://hal.archives-ouvertes.fr/hal-02921475) ISBN 978-2-9555841-3-2

4- Philippe Silar (2020) Podospora anserina. En accès libre (https://hal.archives-ouvertes.fr/hal-02475488) ISBN n°978-2-9555841-2-5

2016

3- Philippe Silar (2016) Bases Fondamentales de la Biologie. En accès libre (https://hal.archives-ouvertes.fr/hal-01401263) ISBN n°978-2-9555841-1-8

2- Philippe Silar (2016) Protistes Eucaryotes : Origine, Evolution et Biologie des Microbes Eucaryotes. En accès libre (https://hal.archives-ouvertes.fr/hal-01263138) ISBN n°978-2-9555841-0-1

2013

1- Philippe Silar & Fabienne Malagnac (2013) Les champignons redécouverts. Ed. Belin. ISBN n°978-2701159027

Chapitres de livre

2022

11- Silar P (2022) Prions and Prion-like Phenomena in Epigenetic Inheritance. In Handbook of Epigenetics: The New Molecular and Medical Genetics (3rd edition). Trygve Tollefsbol ed., pp 73-87. doi.org/10.1016/B978-0-323-91909-8.00013-X

2021

10- Ferrari R, Gautier V & Silar P (2021) Lignin degradation by ascomycetes. In Advances in Botanical Research 99: 77-113. doi.org/10.1016/bs.abr.2021.05.006

2019

9- Silar P (2019) Phenotypic instability in fungi. In Adv. Appl. Microbiol. 107: 141-187. doi:10.1016/bs.aambs.2019.03.002. Epub 2019 Apr 25

2017

8- Nguyen TS, Lalucque H, Malagnac F & Silar P (2017) Prions and Prion-like Phenomena in Epigenetic Inheritance. In Handbook of Epigenetics (2nd edition). Trygve Tollefsbol ed., pp. 61-72. doi.org/10.1016/B978-0-12-805388-1.00005-5

2013

7- Silar P (2013) Podospora anserina: from laboratory to biotechnology. In Genomics of Soil- and Plant-Associated Fungi. Benjamin Horwitz et al., eds. pp 283-309. doi.org/10.1007/978-3-642-39339-6_12

2012

6- Silar P (2012) Hyphal Interference: self versus non-self fungal recognition and hyphal death. In Biocommunication of Fungi. Günther Witzany ed. pp 155-170. doi.org/10.1007/978-94-007-4264-2_10

2011

5- Cocaign A, Dairou J, Busi F, Silar P, Martins M, Mougin C, Rodrigues-Lima F & Dupret JM (2011) Pesticide-Derived Armatic Amines and Their Biotransformation. In Pesticide in the Modern World. Margarita Stoytcheva ed. pp 601-614. doi:10.5772/18279

2010

4- Malagnac F & Silar P (2010) Epigenetics of Eukaryotic Microbes. In Handbook of Epigenetics. Trygve Tollefsbol ed. pp. 185-201. doi.org/10.1016/B978-0-12-375709-8.00013-7

3- Lalucque H, Malagnac F & Silar P (2010) Prions and Prion-like Phenomena in Epigenetic Inheritance. In Handbook of Epigenetics. Trygve Tollefsbol ed. pp. 63-76. doi.org/10.1016/B978-0-12-375709-8.00005-8

2- Brun S & Silar P (2010) Convergent evolution of morphogenetic processes in fungi. In Evolutionary Biology – Concepts, Molecular and Morphological Evolution. pp. 317-328. doi.org/10.1007/978-3-642-12340-5_19

1- Debuchy R, Berteaux-Lecellier V & Silar P (2010) Mating Systems and Sexual Morphogenesis in Ascomycetes. In Cellular and Molecular Biology of Filamentous Fungi. K. Borkovich and D. Ebbole eds. pp. 501-535. doi.org/10.1128/9781555816636.ch33

Autres

8- Silar P (2021) À la découverte des microbes - II : les bactéries et les archées. Bulletin de la Société linnéenne Nord-Picardie 39 : 3-7.

7- Silar P (2020) À la découverte des microbes - I : un aperçu de leur classification. Bulletin de la Société linnéenne Nord-Picardie 38 : 3-7. https://linneenne-amiens.org/wp-content/uploads/2023/02/Annee-2020-volume-38-.pdf

6- Silar P (2013) La mycologie au début du 21 siècle : crise et renouveau. Biol. Auj. 207(4), pages 269-275. doi.org/10.1051/jbio/2013024

5- Pereira C, Azé J, Denise A, Drevet C, Froidevaux C, Silar P & Lespinet O (2013) Comparative analysis of phylogenetic profiles for the enzymatic characterization of fungal groups. JOBIM, editors: Christine Gaspin, Nic Lindley and Cédric Notredame, pages 269-279. https://www.researchgate.net/publication/261511728_Comparative_analysis_of_phylogenetic_profiles_for_the_enzymatic_characterization_of_fungal_group#fullTextFileContent

4- Cocaign A, Dairou J, Rodrigues-Lima F, Silar P & Dupret JM (2012) Biotransformation of aromatic amines in contaminated soils: characterization of fungal acetyltransferases. FEBS J. 279(SI1): 438. doi.org/10.1111/j.1742-4658.2010.08705.x

3- Silar P, Dairou J, Cocaign A, Busi F, Rodrigues-Lima F & Dupret JM (2011) Fungi as a promising tool for bioremediation of soils contaminated with aromatic amines, a major class of pollutants. Nat. Rev. Microbiol. 9: 477. doi.org/10.1038/nrmicro2519-c1

2- Martins M, Silar P, Dairou J, Malagnac F, Rodrigues-Lima F & Dupret JM (2007) Cloning, and functional characterization of two NAT enzymes in the soil fungus Podospora anserina. FEBS J. 274(S1): 226. doi.org/10.1111/j.0014-2956.2007.05861_4.x

1- Silar P, Vierny C, Gagny B, Rossignol M & Haedens V (1997) Génétique de deux dégénérescences cellulaires chez le champignon filamenteux Podospora anserina. C. R. Soc. Biol. 191: 563-577. https://gallica.bnf.fr/ark:/12148/bpt6k97545582/f75.item#

Autres publications des membres du laboratoire en collaboration externe

12- Planchon M, Léger T, Spalla O, Huber G & Ferrari R (2017) Metabolomic and proteomic investigations of impacts of titanium dioxide nanoparticles on Escherichia coli. PLOS One 12(6): e0178437. doi:10.1371/journal.pone.0178437

11- Huang SK, Tangthirasunun N, Phillipps AJL, Dai, DQ, Wanasinghe DN, Wen, TC, Bahkali AH, Hyde KD & Kang JC (2016) Morphology and Phylogeny of Neoscytalidium orchidacearum sp. nov. (Botryosphaeriaceae). Mycobiology 44: 79-84. doi:10.5941/MYCO.2016.44.2.79

10 -Abdallah J, Mihoub M, Gautier V & Richarme G (2016) The DJ-1 superfamily members YhbO and YajL from Escherichia coli repair proteins from glycation by methylglyoxal and glyoxal. Biochem Biophys Res Commun 470(2): 282-286. doi:10.1016/j.bbrc.2016.01.068

9- Samazan F, Rokbi B, Seguin D, Telles F, Gautier V, Richarme G, Chevret D, Varela PF, Velours C & Poquet I (2015) Production, secretion and purification of a correctly folded staphylococcal antigen in Lactococcus lactis. Microb Cell Fact. 14: 104. doi.org/10.1186/s12934-015-0271-z

8- Messaoudi N, Gautier V, Dairou J, Mihoub M, Lelandais G, Bouloc P, Landoulsi A & Richarme G (2015) Fermentation and Alternative Respiration Compensate for NADH Dehydrogenase Deficiency in a Prokaryotic Model of DJ-1 Associated Parkinsonism. Microbiology 161: 2220-2231 doi: 10.1099/mic.0.000181

7- Gelabert A, Gobbi P, Sivry Yann M, Nina, Brayner R, Siron V, BenedettiM & Ferrari R (2015) Testing Nano effect onto model bacteria: impact of speciation and genotypes. Nanotoxicology 23: 1-10. doi:10.3109/17435390.2015.1048323

6- Song Y, Tangthirasunun N, Maharachchikumbura SSN, Jiang Y, Xu J, Hyde KD & Wang Y (2014) Novel Pestalotiopsis Species from Thailand Point to the Rich Undiscovered Diversity of this Chemically Creative Genus. Cryptogamie, Mycologie 25: 139-149. doi.org/10.7872/crym.v35.iss2.2014.139

5- Ruprich-Robert G, Wery M, Després D, Boulard Y & Thuriaux P (2011) Crucial role of a dicarboxylic motif in the catalytic center of yeast RNA polymerases. Curr Genet. 57: 327-34. doi:10.1007/s00294-011-0350-6

4- Chapeland-Leclerc F, Hennequin C, Papon N, Noël T, Girard A, Socié G, Ribaud P & Lacroix C (2010) Acquisition of flucytosine, azole, and caspofungin resistance in Candida glabrata bloodstream isolates serially obtained from a hematopoietic stem cell transplant recipient. Antimicrob Agents Chemother. 54: 1360-2. doi:10.1128/AAC.01138-09

3- Ruprich-Robert G, Thuriaux P (2010) Non-canonical DNA transcription enzymes and the conservation of two-barrel RNA polymerases. Nucleic Acids Res. 38: 4559-4569. doi: 10.1093/nar/gkq201

2- Storlazzi A, Gargano S, Ruprich-Robert G, Falque M, David M, Kleckner N & Zickler D (2010) Recombination proteins mediate meiotic spatial chromosome organization and pairing. Cell 141: 94-106. doi:10.1016/j.cell.2010.02.041

1- Padilla-Parra S, Audugé N, Lalucque H, Mevel JC, Coppey-Moisan M & Tramier M. (2009) Quantitative comparison of different fluorescent protein couples for fast FRET-FLIM acquisition. Biophys J. 97: 2368-2376. doi:10.1016/j.bpj.2009.07.044

Thèses du laboratoire